Black and white and read all over: the past, present and future of giant panda genetics - Wei, F.; Hu, Y.; Zhu, L.; Bruford, M. W.; Zhan, X.; Zhang, L. (Mol Ecol, 2012)

Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary - Krause, J.; Unger, T.; Noçon, A.; Malaspinas, A. -. S.; Kolokotronis, S. -. O.; Stiller, M.; Soibelzon, L.; Spriggs, H.; Dear, P. H.; Briggs, A. W.; Bray, S. C. E.; O’Brien, S. J.; et al. (BMC Evol Biol, 2008)

Genetic consequences of historical anthropogenic and ecological events on giant pandas - Zhu, L.; Hu, Y.; Qi, D.; Wu, H.; Zhan, X.; Zhang, Z.; Bruford, M. W.; Wang, J.; Yang, X.; Gu, X.; Zhang, L.; Zhang, B.; et al. (Ecology, 2013)

The bamboo-eating giant panda harbors a carnivore-like gut microbiota, with excessive seasonal variations - Xue, Z.; Zhang, W.; Wang, L.; Hou, R.; Zhang, M.; Fei, L.; Zhang, X.; Huang, H.; Bridgewater, L. C.; Jiang, Y.; Jiang, C.; Zhao, L.; et al. (MBio, 2015)

The microbial community in the feces of the giant panda (Ailuropoda melanoleuca) as determined by PCR-TGGE profiling and clone library analysis - Wei, G.; Lu, H.; Zhou, Z.; Xie, H.; Wang, A.; Nelson, K.; Zhao, L. (Microb Ecol, 2007)

Evidence of cellulose metabolism by the giant panda gut microbiome - Zhu, L.; Wu, Q.; Dai, J.; Zhang, S.; Wei, F. (Proc Natl Acad Sci U S A, 2011)

Dietary shifts may trigger dysbiosis and mucous stools in giant pandas (Ailuropoda melanoleuca) - Williams, C. L.; Dill-McFarland, K. A.; Vandewege, M. W.; Sparks, D. L.; Willard, S. T.; Kouba, A. J.; Suen, G.; Brown, A. E. (Front Microbiol, 2016)

The giant panda gut microbiome - Wei, F.; Wang, X.; Wu, Q. (Trends Microbiol, 2015)

Fatal canine distemper virus infection of giant pandas in China - Feng, N.; Yu, Y.; Wang, T.; Wilker, P.; Wang, J.; Li, Y.; Sun, Z.; Gao, Y.; Xia, X. (Sci Rep, 2016)

Identification of canine parvovirus with the Q370R point mutation in the VP2 gene from a giant panda (Ailuropoda melanoleuca) - Guo, L.; Yang, S.; Chen, S.; Zhang, Z.; Wang, C.; Hou, R.; Ren, Y.; Wen, X.; Cao, S.; Guo, W.; Hao, Z.; Quan, Z.; et al. (Virol J, 2013)

Influenza A(H1N1)pdm09 virus infection in giant pandas, China - Li, D.; Zhu, L.; Cui, H.; Ling, S.; Fan, S.; Yu, Z.; Zhou, Y.; Wang, T.; Qian, J.; Xia, X.; Xu, Z.; Gao, Y.; et al. (Emerg Infect Dis, 2014)

Viral metagenomics - Edwards, R. A.; Rohwer, F. (Nat Rev Microbiol, 2005)

Animal virus discovery: improving animal health, understanding zoonoses, and opportunities for vaccine development - Delwart, E. (Curr Opin Virol, 2012)

Faecal virome of cats in an animal shelter - Zhang, W.; Li, L.; Deng, X.; Kapusinszky, B.; Pesavento, P. A.; Delwart, E. (J Gen Virol, 2014)

Viral nucleic acids in human plasma pools - Zhang, W.; Li, L.; Deng, X.; Blümel, J.; Nübling, C. M.; Hunfeld, A.; Baylis, S. A.; Delwart, E. (Transfusion, 2016)

Identification of a novel human papillomavirus by metagenomic analysis of vaginal swab samples from pregnant women - Liu, Z.; Yang, S.; Wang, Y.; Shen, Q.; Yang, Y.; Deng, X.; Zhang, W.; Delwart, E. (Virol J, 2016)

Deng X, Naccache SN, Ng T, Federman S, Li L, Chiu CY, Delwart EL. An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next-generation sequencing data. Nucleic Acids Res. 2015;43(7):e46.

Profile hidden Markov models for the detection of viruses within metagenomic sequence data - Skewes-Cox, P.; Sharpton, T. J.; Pollard, K. S.; DeRisi, J. L. (PLoS One, 2014)

Hidden Markov model speed heuristic and iterative HMM search procedure - Johnson, L. S.; Eddy, S. R.; Portugaly, E. (BMC Bioinformatics, 2010)

A new generation of homology search tools based on probabilistic inference - Eddy, S. R. (Genome inform, 2009)

HMMER web server: interactive sequence similarity searching - Finn, R. D.; Clements, J.; Eddy, S. R. (Nucleic Acids Res, 2011)

Pfam: the protein families database - Finn, R. D.; Bateman, A.; Clements, J.; Coggill, P.; Eberhardt, R. Y.; Eddy, S. R.; Heger, A.; Hetherington, K.; Holm, L.; Mistry, J.; Sonnhammer, E. L. L.; Tate, J.; et al. (Nucleic Acids Res, 2014)

CDD: NCBI’s conserved domain database - Marchler-Bauer, A.; Derbyshire, M. K.; Gonzales, N. R.; Lu, S.; Chitsaz, F.; Geer, L. Y.; Geer, R. C.; He, J.; Gwadz, M.; Hurwitz, D. I.; Lanczycki, C. J.; Lu, F.; et al. (Nucleic Acids Res, 2015)

Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments - Bernard, H. -. U.; Burk, R. D.; Chen, Z.; Doorslaer, K.; Hausen, H.; Villiers, E. -. M. (Virology, 2010)

Genomic analysis of the first laboratory-mouse papillomavirus - Joh, J.; Jenson, A. B.; King, W.; Proctor, M.; Ingle, A.; Sundberg, J. P.; Ghim, S. (J Gen Virol, 2011)

Bovine and human papillomaviruses: a comparative review - Munday, J. S. (Vet Pathol, 2014)

Novel papillomavirus isolated from the oral mucosa of a polar bear does not cluster with other papillomaviruses of carnivores - Stevens, H.; Rector, A.; Bertelsen, M. F.; Leifsson, P. S.; Ranst, M. (Vet Microbiol, 2008)

Munday JS, Thomson N, Dunowska M, Knight CG, Laurie RE HS. Genomic characterisation of the feline sarcoid-associated papillomavirus and proposed classification as Bos taurus papillomavirus type 14. PubMed—NCBI Vet Microbiol. 2015;177:289–95.

Picornavirales, a proposed order of positive-sense single-stranded RNA viruses with a pseudo-T = 3 virion architecture - Gall, O.; Christian, P.; Fauquet, C. M.; King, A. M. Q.; Knowles, N. J.; Nakashima, N.; Stanway, G.; Gorbalenya, A. E. (Arch Virol, 2008)

The fecal virome of pigs on a high-density farm - Shan, T.; Li, L.; Simmonds, P.; Wang, C.; Moeser, A.; Delwart, E. (J Virol, 2011)

Identification of a novel Picornavirales virus distantly related to posavirus in swine feces - Hause, B. M.; Hesse, R. A.; Anderson, G. A. (Virus Genes, 2015)

Highly diverse posaviruses in swine faeces are aquatic in origin - Hause, B. M.; Palinski, R.; Hesse, R.; Anderson, G. (J Gen Virol, 2016)

A novel posavirus-related single-stranded RNA virus from fish (Cyprinus carpio) - Reuter, G.; Pankovics, P.; Delwart, E.; Boros, Á. (Arch Virol, 2015)

A novel genus in the order Picornavirales detected in human stool - Oude Munnink, B. B.; Cotten, M.; Deijs, M.; Jebbink, M. F.; Bakker, M.; Farsani, S. M. J.; Canuti, M.; Kellam, P.; Hoek, L. (J Gen Virol, 2015)

Human anelloviruses: an update of molecular, epidemiological and clinical aspects - Spandole, S.; Cimponeriu, D.; Berca, L. M.; Mihăescu, G. (Arch Virol, 2015)

Increased viral load and prevalence of Torque teno sus virus 2 (TTSuV2) in pigs experimentally infected with classical swine fever virus (CSFV) - Aramouni, M.; Kekarainen, T.; Ganges, L.; Tarradas, J.; Segalés, J. (Virus Res, 2013)

Temporal response of the human virome to immunosuppression and antiviral therapy - Vlaminck, I.; Khush, K. K.; Strehl, C.; Kohli, B.; Luikart, H.; Neff, N. F.; Okamoto, J.; Snyder, T. M.; Cornfield, D. N.; Nicolls, M. R.; Weill, D.; Bernstein, D.; et al. (Cell, 2013)

AIDS alters the commensal plasma virome - Li, L.; Deng, X.; Linsuwanon, P.; Bangsberg, D.; Bwana, M. B.; Hunt, P.; Martin, J. N.; Deeks, S. G.; Delwart, E. (J Virol, 2013)

Viral metagenomics reveal blooms of anelloviruses in the respiratory tract of lung transplant recipients - Young, J. C.; Chehoud, C.; Bittinger, K.; Bailey, A.; Diamond, J. M.; Cantu, E.; Haas, A. R.; Abbas, A.; Frye, L.; Christie, J. D.; Bushman, F. D.; Collman, R. G. (Am J Transplant, 2015)

Genomoviridae: a new family of widespread single-stranded DNA viruses - Krupovic, M.; Ghabrial, S. A.; Jiang, D.; Varsani, A. (Arch Virol, 2016)

Multiple diverse circoviruses infect farm animals and are commonly found in human and chimpanzee feces - Li, L.; Kapoor, A.; Slikas, B.; Bamidele, O. S.; Wang, C.; Shaukat, S.; Masroor, M. A.; Wilson, M. L.; Ndjango, J. -. B. N.; Peeters, M.; Gross-Camp, N. D.; Muller, M. N.; et al. (J Virol, 2010)

Circovirus in tissues of dogs with vasculitis and hemorrhage - Li, L.; McGraw, S.; Zhu, K.; Leutenegger, C. M.; Marks, S. L.; Kubiski, S.; Gaffney, P.; Cruz, F. N.; Wang, C.; Delwart, E.; Pesavento, P. A. (Emerg Infect Dis, 2013)

Concurrent infections are important for expression of porcine circovirus associated disease - Opriessnig, T.; Halbur, P. G. (Virus Res, 2012)

Rapidly expanding genetic diversity and host range of the Circoviridae viral family and other Rep encoding small circular ssDNA genomes - Delwart, E.; Li, L. (Virus Res, 2012)

Diverse circular ssDNA viruses discovered in dragonflies (Odonata: Epiprocta) - Rosario, K.; Dayaram, A.; Marinov, M.; Ware, J.; Kraberger, S.; Stainton, D.; Breitbart, M.; Varsani, A. (J Gen Virol, 2012)

A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus - Yu, X.; Li, B.; Fu, Y.; Jiang, D.; Ghabrial, S. A.; Li, G.; Peng, Y.; Xie, J.; Cheng, J.; Huang, J.; Yi, X. (Proc Natl Acad Sci U S A, 2010)

Transplacental transmission of human Papillomavirus - Rombaldi, R. L.; Serafini, E. P.; Mandelli, J.; Zimmermann, E.; Losquiavo, K. P. (Virol J, 2008)

Characterisation of a diverse range of circular replication-associated protein encoding DNA viruses recovered from a sewage treatment oxidation pond - Kraberger, S.; Argüello-Astorga, G. R.; Greenfield, L. G.; Galilee, C.; Law, D.; Martin, D. P.; Varsani, A. (Infect Genet Evol, 2015)

Identification of diverse circular single-stranded DNA viruses in adult dragonflies and damselflies (Insecta: Odonata) of Arizona and Oklahoma, USA - Dayaram, A.; Potter, K. A.; Pailes, R.; Marinov, M.; Rosenstein, D. D.; Varsani, A. (Infect Genet Evol, 2015)

Metagenomic analysis of the viral flora of pine marten and European badger feces - Brand, J. M. A.; Leeuwen, M.; Schapendonk, C. M.; Simon, J. H.; Haagmans, B. L.; Osterhaus, A. D. M. E.; Smits, S. L. (J Virol, 2012)

Lamberto I, Gunst K, Müller H, Zur Hausen H, de Villiers E-M. Mycovirus-like DNA virus sequences from cattle serum and human brain and serum samples from multiple sclerosis patients. Genome Announc. 2014;2(4):e00848-14. doi: 10.1128/genomeA.00848-14.

Divergent Gemycircularvirus in HIV-positive blood, France - Uch, R.; Fournier, P. -. E.; Robert, C.; Blanc-Tailleur, C.; Galicher, V.; Barre, R.; Jordier, F.; Micco, P.; Raoult, D.; Biagini, P. (Emerg Infect Dis, 2015)

Small circular single stranded DNA viral genomes in unexplained cases of human encephalitis, diarrhea, and in untreated sewage - Phan, T. G.; Mori, D.; Deng, X.; Rajindrajith, S.; Ranawaka, U.; Fan Ng, T. F.; Bucardo-Rivera, F.; Orlandi, P.; Ahmed, K.; Delwart, E. (Virology, 2015)

Animal picobirnavirus - Ganesh, B.; Masachessi, G.; Mladenova, Z. (Virusdisease, 2014)

Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research - Nibert, M. L.; Ghabrial, S. A.; Maiss, E.; Lesker, T.; Vainio, E. J.; Jiang, D.; Suzuki, N. (Virus Res, 2014)

A field guide to eukaryotic circular single-stranded DNA viruses: insights gained from metagenomics - Rosario, K.; Duffy, S.; Breitbart, M. (Arch Virol, 2012)

Discovery of a genome of a distant relative of chicken anemia virus reveals a new member of the genus Gyrovirus - Rijsewijk, F. A. M.; Dos Santos, H. F.; Teixeira, T. F.; Cibulski, S. P.; Varela, A. P. M.; Dezen, D.; Franco, A. C.; Roehe, P. M. (Arch Virol, 2011)

Identification of the first human gyrovirus, a virus related to chicken anemia virus - Sauvage, V.; Cheval, J.; Foulongne, V.; Gouilh, M. A.; Pariente, K.; Manuguerra, J. C.; Richardson, J.; Dereure, O.; Lecuit, M.; Burguiere, A.; Caro, V.; Eloit, M. (J Virol, 2011)

Exploring the virome of diseased horses - Li, L.; Giannitti, F.; Low, J.; Keyes, C.; Ullmann, L. S.; Deng, X.; Aleman, M.; Pesavento, P. A.; Pusterla, N.; Delwart, E. (J Gen Virol, 2015)

Surveying the global virome: identification and characterization of HCV-related animal hepaciviruses - Scheel, T. K.; Simmonds, P. K. A. (Antivir Res, 2015)

Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases - Wu, Z.; Yang, L.; Ren, X.; He, G.; Zhang, J.; Yang, J.; Qian, Z.; Dong, J.; Sun, L.; Zhu, Y.; Du, J.; Yang, F.; et al. (ISME J, 2016)

Metagenomic survey of viral diversity obtained from feces of Subantarctic and South American fur seals - Kluge, M.; Campos, F. S.; Tavares, M.; Amorim, D. B.; Valdez, F. P.; Giongo, A.; Roehe, P. M.; Franco, A. C. (PLoS One, 2016)

Human papillomavirus type 13 and pygmy chimpanzee papillomavirus type 1: comparison of the genome organizations - Ranst, M.; Fuse, A.; Fiten, P.; Beuken, E.; Pfister, H.; Burk, R. D.; Opdenakker, G. (Virology, 1992)

Cloning and genomic characterization of Felis domesticus papillomavirus type 1 - Tachezy, R.; Duson, G.; Rector, A.; Jenson, A. B.; Sundberg, J. P.; Ranst, M. (Virology, 2002)

Consistent detection of bovine papillomavirus in lesions, intact skin and peripheral blood mononuclear cells of horses affected by hoof canker - Brandt, S.; Schoster, A.; Tober, R.; Kainzbauer, C.; Burgstaller, J. P.; Haralambus, R.; Steinborn, R.; Hinterhofer, C.; Stanek, C. (Equine Vet J, 2011)

Oral papillomatosis caused by Enhydra lutris papillomavirus 1 (ElPV-1) in southern sea otters (Enhydra lutris nereis) in California, USA - Ng, T. F. F.; Miller, M. A.; Kondov, N. O.; Dodd, E. M.; Batac, F.; Manzer, M.; Ives, S.; Saliki, J. T.; Deng, X.; Delwart, E. (J Wildl Dis, 2015)

Isolation and cloning of the raccoon (Procyon lotor) papillomavirus type 1 by using degenerate papillomavirus-specific primers - Rector, A.; Doorslaer, K.; Bertelsen, M.; Barker, I. K.; Olberg, R. -. A.; Lemey, P.; Sundberg, J. P.; Ranst, M. (J Gen Virol, 2005)

The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups - Koonin, E. V.; Wolf, Y. I.; Nagasaki, K.; Dolja, V. V. (Nat Rev Microbiol, 2008)

Novel myco-like DNA viruses discovered in the faecal matter of various animals - Sikorski, A.; Massaro, M.; Kraberger, S.; Young, L. M.; Smalley, D.; Martin, D. P.; Varsani, A. (Virus Res, 2013)

Classification of TTV and related viruses (anelloviruses) - Biagini, P. (Curr Top Microbiol Immunol, 2009)

The diversity of torque teno viruses: in vitro replication leads to the formation of additional replication-competent subviral molecules - Villiers, E. -. M.; Borkosky, S. S.; Kimmel, R.; Gunst, K.; Fei, J. -. W. (J Virol, 2011)

Identification of novel anelloviruses with broad diversity in UK rodents - Nishiyama, S.; Dutia, B. M.; Stewart, J. P.; Meredith, A. L.; Shaw, D. J.; Simmonds, P.; Sharp, C. P. (J Gen Virol, 2014)

Development of PCR assays with nested primers specific for differential detection of three human anelloviruses and early acquisition of dual or triple infection during infancy - Ninomiya, M.; Takahashi, M.; Nishizawa, T.; Shimosegawa, T.; Okamoto, H. (J Clin Microbiol, 2008)

Mixed infections of adults and children with multiple TTV-like mini virus isolates - Vasconcelos, H. C. F.; Cataldo, M.; Niel, C. (J Med Virol, 2002)

Marked genomic heterogeneity and frequent mixed infection of TT virus demonstrated by PCR with primers from coding and noncoding regions - Okamoto, H.; Takahashi, M.; Nishizawa, T.; Ukita, M.; Fukuda, M.; Tsuda, F.; Miyakawa, Y.; Mayumi, M. (Virology, 1999)

Local virus extinctions following a host population bottleneck - Kapusinszky, B.; Mulvaney, U.; Jasinska, A. J.; Deng, X.; Freimer, N.; Delwart, E. (J Virol, 2015)

Torque Teno virus load as a biomarker of immunosuppression? New hopes and insights - Béland, K.; Dore-Nguyen, M.; Gagné, M. -. J.; Patey, N.; Brassard, J.; Alvarez, F.; Halac, U. (J Infect Dis, 2014)

Torque teno virus viremia load size in patients with selected congenital defects of innate immunity - Maggi, F.; Pifferi, M.; Michelucci, A.; Albani, M.; Sbranti, S.; Lanini, L.; Simi, P.; Macchia, P.; Pistello, M.; Bendinelli, M. (Clin Vaccine Immunol, 2011)

The Virome in mammalian physiology and disease - Virgin, H. W. (Cell, 2014)