Towards a systems understanding of MHC class I and MHC class II antigen presentation - Neefjes, J.; Jongsma, M. L.; Paul, P.; Bakke, O. (Nat Rev Immunol, 2011)

Roles for calreticulin and a novel glycoprotein, tapasin, in the interaction of MHC class I molecules with TAP - Sadasivan, B.; Lehner, P. J.; Ortmann, B.; Spies, T.; Cresswell, P. (Immunity, 1996)

The proteasome: structure, function, and role in the cell - Adams, J. (Cancer Treat Rev, 2003)

Immunoproteasomes: structure, function, and antigen presentation - Ferrington, D. A.; Gregerson, D. S. (Prog Mol Biol Transl Sci, 2012)

PA28alphabeta: the enigmatic magic ring of the proteasome? - Cascio, P. (Biomol Ther, 2014)

No evidence for immunoproteasomes in chicken lymphoid organs and activated lymphocytes - Erath, S.; Groettrup, M. (Immunogenetics, 2015)

A sequential model for peptide binding and transport by the transporters associated with antigen processing - van Endert, P. M.; Tampe, R.; Meyer, T. H.; Tisch, R.; Bach, J. F.; McDevitt, H. O. (Immunity, 1994)

Multiple regions of the transporter associated with antigen processing (TAP) contribute to its peptide binding site - Nijenhuis, M.; Hammerling, G. J. (J Immunol, 1996)

Conformation of peptides bound to the transporter associated with antigen processing (TAP) - Herget, M.; Baldauf, C.; Scholz, C.; Parcej, D.; Wiesmuller, K. H.; Tampe, R.; Abele, R.; Bordignon, E. (Proc Natl Acad Sci U S A, 2011)

Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules - Peters, B.; Tong, W.; Sidney, J.; Sette, A.; Weng, Z. (Bioinformatics, 2003)

Recognition principle of the TAP transporter disclosed by combinatorial peptide libraries - Uebel, S.; Kraas, W.; Kienle, S.; Wiesmuller, K. H.; Jung, G.; Tampe, R. (Proc Natl Acad Sci U S A, 1997)

The peptide-binding motif for the human transporter associated with antigen processing - van Endert, P. M.; Riganelli, D.; Greco, G.; Fleischhauer, K.; Sidney, J.; Sette, A.; Bach, J. F. (J Exp Med, 1995)

The nature of the MHC class I peptide loading complex - Cresswell, P.; Bangia, N.; Dick, T.; Diedrich, G. (Immunol Rev, 1999)

HLA-B27-restricted antigen presentation in the absence of tapasin reveals polymorphism in mechanisms of HLA class I peptide loading - Peh, C. A.; Burrows, S. R.; Barnden, M.; Khanna, R.; Cresswell, P.; Moss, D. J.; McCluskey, J. (Immunity, 1998)

Disulfide bond isomerization and the assembly of MHC class I-peptide complexes - Dick, T. P.; Bangia, N.; Peaper, D. R.; Cresswell, P. (Immunity, 2002)

Structural basis of carbohydrate recognition by calreticulin - Kozlov, G.; Pocanschi, C. L.; Rosenauer, A.; Bastos-Aristizabal, S.; Gorelik, A.; Williams, D. B.; Gehring, K. (J Biol Chem, 2010)

ERAP1-ERAP2 dimers trim MHC I-bound precursor peptides; implications for understanding peptide editing - Chen, H.; Li, L.; Weimershaus, M.; Evnouchidou, I.; van Endert, P.; Bouvier, M. (Sci Rep, 2016)

TAPBPR: a new player in the MHC class I presentation pathway - Hermann, C.; Trowsdale, J.; Boyle, L. H. (Tissue Antigens, 2015)

Interaction of TAPBPR, a tapasin homolog, with MHC-I molecules promotes peptide editing - Morozov, G. I.; Zhao, H.; Mage, M. G.; Boyd, L. F.; Jiang, J.; Dolan, M. A.; Venna, R.; Norcross, M. A.; McMurtrey, C. P.; Hildebrand, W. (Proc Natl Acad Sci U S A, 2016)

TAPBPR bridges UDP-glucose:glycoprotein glucosyltransferase 1 onto MHC class I to provide quality control in the antigen presentation pathway - Neerincx, A.; Hermann, C.; Antrobus, R.; van Hateren, A.; Cao, H.; Trautwein, N.; Stevanovic, S.; Elliott, T.; Deane, J. E.; Boyle, L. H. (elife, 2017)

Gene organisation determines evolution of function in the chicken MHC - Kaufman, J.; Jacob, J.; Shaw, I.; Walker, B.; Milne, S.; Beck, S.; Salomonsen, J. (Immunol Rev, 1999)

A mechanistic basis for the co-evolution of chicken tapasin and major histocompatibility complex class I (MHC I) proteins - van Hateren, A.; Carter, R.; Bailey, A.; Kontouli, N.; Williams, A. P.; Kaufman, J.; Elliott, T. (J Biol Chem, 2013)

The dominantly expressed class I molecule of the chicken MHC is explained by coevolution with the polymorphic peptide transporter (TAP) genes - Walker, B. A.; Hunt, L. G.; Sowa, A. K.; Skjodt, K.; Gobel, T. W.; Lehner, P. J.; Kaufman, J. (Proc Natl Acad Sci U S A, 2011)

Expression levels of MHC class I molecules are inversely correlated with promiscuity of peptide binding - Chappell, P.; Meziane El, K.; Harrison, M.; Magiera, L.; Hermann, C.; Mears, L.; Wrobel, A. G.; Durant, C.; Nielsen, L. L.; Buus, S. (elife, 2015)

Surface expression, peptide repertoire, and thermostability of chicken class I molecules correlate with peptide transporter specificity - Tregaskes, C. A.; Harrison, M.; Sowa, A. K.; van Hateren, A.; Hunt, L. G.; Vainio, O.; Kaufman, J. (Proc Natl Acad Sci U S A, 2016)

Crystal structures of two rat MHC class Ia (RT1-a) molecules that are associated differentially with peptide transporter alleles TAP-A and TAP-B - Rudolph, M. G.; Stevens, J.; Speir, J. A.; Trowsdale, J.; Butcher, G. W.; Joly, E.; Wilson, I. A. (J Mol Biol, 2002)

Co-evolution of rat TAP transporters and MHC class I RT1-a molecules - Joly, E.; Le Rolle, A. F.; Gonzalez, A. L.; Mehling, B.; Stevens, J.; Coadwell, W. J.; Hunig, T.; Howard, J. C.; Butcher, G. W. (Curr Biol, 1998)

Isolation of Xenopus LMP-7 homologues. Striking allelic diversity and linkage to MHC - Namikawa, C.; Salter-Cid, L.; Flajnik, M. F.; Kato, Y.; Nonaka, M.; Sasaki, M. (J Immunol, 1995)

Two highly divergent ancient allelic lineages of the transporter associated with antigen processing (TAP) gene in Xenopus: further evidence for co-evolution among MHC class I region genes - Ohta, Y.; Powis, S. J.; Lohr, R. L.; Nonaka, M.; Pasquier, L. D.; Flajnik, M. F. (Eur J Immunol, 2003)

Grimholt U, Tsukamoto K, Azuma T, Leong J, Koop BF, Dijkstra JM. A comprehensive analysis of teleost MHC class I sequences. BMC Evol Biol. 2015;15:32-49.

Alternative haplotypes of antigen processing genes in zebrafish diverged early in vertebrate evolution - McConnell, S. C.; Hernandez, K. M.; Wcisel, D. J.; Kettleborough, R. N.; Stemple, D. L.; Yoder, J. A.; Andrade, J.; de Jong, J. L. (Proc Natl Acad Sci U S A, 2016)

Transspecies dimorphic allelic lineages of the proteasome subunit beta-type 8 gene (PSMB8) in the teleost genus Oryzias - Miura, F.; Tsukamoto, K.; Mehta, R. B.; Naruse, K.; Magtoon, W.; Nonaka, M. (Proc Natl Acad Sci U S A, 2010)

Evolutionary analysis of two classical MHC class I loci of the medaka fish, Oryzias Latipes: haplotype-specific genomic diversity, locus-specific polymorphisms, and interlocus homogenization - Nonaka, M. I.; Nonaka, M. (Immunogenetics, 2010)

Long-lived dichotomous lineages of the proteasome subunit beta type 8 (PSMB8) gene surviving more than 500 million years as alleles or paralogs - Tsukamoto, K.; Miura, F.; Fujito, N. T.; Yoshizaki, G.; Nonaka, M. (Mol Biol Evol, 2012)

MHC polymorphism and disease resistance in Atlantic salmon (Salmo salar); facing pathogens with single expressed major histocompatibility class I and class II loci - Grimholt, U.; Larsen, S.; Nordmo, R.; Midtlyng, P.; Kjoeglum, S.; Storset, A.; Saebo, S.; Stet, R. J. (Immunogenetics, 2003)

A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification - Macqueen, D. J.; Johnston, I. A. (Proc R Soc B, 2013)

Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon - Lukacs, M. F.; Harstad, H.; Bakke, H. G.; Beetz-Sargent, M.; McKinnel, L.; Lubieniecki, K. P.; Koop, B. F.; Grimholt, U. (BMC Genomics, 2010)

Genomic organization of duplicated major histocompatibility complex class I regions in Atlantic salmon (Salmo salar) - Lukacs, M. F.; Harstad, H.; Grimholt, U.; Beetz-Sargent, M.; Cooper, G. A.; Reid, L.; Bakke, H. G.; Phillips, R. B.; Miller, K. M.; Davidson, W. S. (BMC Genomics, 2007)

The Atlantic salmon genome provides insights into rediploidization - Lien, S.; Koop, B. F.; Sandve, S. R.; Miller, J. R.; Kent, M. P.; Nome, T.; Hvidsten, T. R.; Leong, J. S.; Minkley, D. R.; Zimin, A. (Nature, 2016)

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates - Berthelot, C.; Brunet, F.; Chalopin, D.; Juanchich, A.; Bernard, M.; Noel, B.; Bento, P.; Da Silva, C.; Labadie, K.; Alberti, A. (Nat Comm, 2014)

The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei - Rondeau, E. B.; Minkley, D. R.; Leong, J. S.; Messmer, A. M.; Jantzen, J. R.; von Schalburg, K. R.; Lemon, C.; Bird, N. H.; Koop, B. F. (PLoS One, 2014)

Interchromosomal duplication of major histocompatibility complex class I regions in rainbow trout (Oncorhynchus mykiss), a species with a presumably recent tetraploid ancestry - Shiina, T.; Dijkstra, J. M.; Shimizu, S.; Watanabe, A.; Yanagiya, K.; Kiryu, I.; Fujiwara, A.; Nishida-Umehara, C.; Kaba, Y.; Hirono, I. (Immunogenetics, 2005)

Nucleotide sequence of the MHC class I genomic region of a teleost, the medaka (Oryzias latipes) - Matsuo, M.; Asakawa, S.; Shimizu, N.; Kimura, H.; Nonaka, M. (Immunogenetics, 2002)

Unprecedented intraspecific diversity of the MHC class I region of a teleost medaka, Oryzias latipes - Tsukamoto, K.; Hayashi, S.; Matsuo, M.; Nonaka, M.; Kondo, M.; Shima, M. I.; Asakawa, S.; Shimizu, N.; Nonaka, M. (Immunogenetics, 2005)

New MHC class Ia Domain lineages in rainbow trout (Oncorhynchus mykiss) which are shared with other fish species - Kiryu, I.; Dijkstra, J. M.; Sarder, R. I.; Fujiwara, A.; Yoshiura, Y.; Ototake, M. (Fish Shellfish Immunol, 2005)

Conservation of an alpha 2 domain within the teleostean world, MHC class I from the rainbow trout Oncorhynchus mykiss - Hansen, J. D.; Strassburger, P.; Du, P. L. (Dev Comp Immunol, 1996)

Retained orthologous relationships of the MHC class I genes during euteleost evolution - Nonaka, M. I.; Aizawa, K.; Mitani, H.; Bannai, H. P.; Nonaka, M. (Mol Biol Evol, 2011)

Modes of salmonid MHC class I and II evolution differ from the primate paradigm - Shum, B. P.; Guethlein, L.; Flodin, L. R.; Adkison, M. A.; Hedrick, R. P.; Nehring, R. B.; Stet, R. J.; Secombes, C.; Parham, P. (J Immunol, 2001)

The first N-terminal transmembrane helix of each subunit of the antigenic peptide transporter TAP is essential for independent tapasin binding - Koch, J.; Guntrum, R.; Tampe, R. (FEBS Lett, 2006)

Rainbow trout (Oncorhynchus mykiss) contain two calnexin genes which encode distinct proteins - Sever, L.; Vo, N. T.; Bols, N. C.; Dixon, B. (Dev Comp Immunol, 2014)

The beta 2-microglobulin locus of rainbow trout (Oncorhynchus mykiss) contains three polymorphic genes - Magor, K. E.; Shum, B. P.; Parham, P. (J Immunol, 2004)

Unexpected beta2-microglobulin sequence diversity in individual rainbow trout - Shum, B. P.; Azumi, K.; Zhang, S.; Kehrer, S. R.; Raison, R. L.; Detrich, H. W.; Parham, P. (Proc Natl Acad Sci U S A, 1996)

Identification of two distinct types of beta-2 microglobulin in marine fish, Pagrus major and Seriola quinqueradiata - Kondo, H.; Darawiroj, D.; Gung, Y. T.; Yasuike, M.; Hirono, I.; Aoki, T. (Vet Immunol Immunopathol, 2010)

Beta 2-microglobulin restriction of antigen presentation - Perarnau, B.; Siegrist, C. A.; Gillet, A.; Vincent, C.; Kimura, S.; Lemonnier, F. A. (Nature, 1990)

Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus) - Liu, H.; Peatman, E.; Wang, W.; Abernathy, J.; Liu, S.; Kucuktas, H.; Lu, J.; Xu, D. H.; Klesius, P.; Waldbieser, G. (Dev Comp Immunol, 2011)

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons - Braasch, I.; Gehrke, A. R.; Smith, J. J.; Kawasaki, K.; Manousaki, T.; Pasquier, J.; Amores, A.; Desvignes, T.; Batzel, P.; Catchen, J. (Nat Genet, 2016)

Calreticulin in the immune system: ins and outs - Raghavan, M.; Wijeyesakere, S. J.; Peters, L. R.; Del Cid, N. (Trends Immunol, 2013)

Molecular cloning and characterization of calreticulin from rainbow trout (Oncorhynchus mykiss) - Kales, S.; Fujiki, K.; Dixon, B. (Immunogenetics, 2004)

Calreticulin in rainbow trout: a limited response to endoplasmic reticulum (ER) stress - Kales, S. C.; Bols, N. C.; Dixon, B. (Comp Biochem Physiol B Biochem Mol Biol, 2007)

The cloning and inducible expression of the rainbow trout ERp57 gene - Sever, L.; Bols, N. C.; Dixon, B. (Fish Shellfish Immunol, 2013)

Two thioredoxin-superfamily members from sea bass (Dicentrarchus labrax, L.): characterization of PDI (PDIA1) and ERp57 (PDIA3) - Pinto, R. D.; Moreira, A. R.; Pereira, P. J.; dos Santos, N. M. (Fish Shellfish Immunol., 2013)

Identification and regulatory analysis of rainbow trout tapasin and tapasin-related genes - Landis, E. D.; Palti, Y.; Dekoning, J.; Drew, R.; Phillips, R. B.; Hansen, J. D. (Immunogenetics, 2006)

A human TAPBP (TAPASIN)-related gene, TAPBP-R - Teng, M. S.; Stephens, R.; Du Pasquier, L.; Freeman, T.; Lindquist, J. A.; Trowsdale, J. (Eur J Immunol, 2002)

Insights into MHC class I peptide loading from the structure of the tapasin-ERp57 thiol oxidoreductase heterodimer - Dong, G.; Wearsch, P. A.; Peaper, D. R.; Cresswell, P.; Reinisch, K. M. (Immunity, 2009)

Distinct functions for the glycans of tapasin and heavy chains in the assembly of MHC class I molecules - Rizvi, S. M.; Del Cid, N.; Lybarger, L.; Raghavan, M. (J Immunol, 2011)

The double lysine motif of tapasin is a retrieval signal for retention of unstable MHC class I molecules in the endoplasmic reticulum - Paulsson, K. M.; Jevon, M.; Wang, J. W.; Li, S.; Wang, P. (J Immunol, 2006)

Ab initio gene finding in drosophila genomic DNA - Salamov, A. A.; Solovyev, V. V. (Genome Res, 2000)

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Clustal W and Clustal X version 2.0 - Larkin, M. A.; Blackshields, G.; Brown, N. P.; Chenna, R.; McGettigan, P. A.; McWilliam, H.; Valentin, F.; Wallace, I. M.; Wilm, A.; Lopez, R. (Bioinformatics, 2007)

MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets - Kumar, S.; Stecher, G.; Tamura, K. (Mol Biol Evol, 2016)

Paleontological evidence to date the tree of life - Benton, M. J.; Donoghue, P. C. (Mol Biol Evol, 2007)

Pike and salmon as sister taxa: detailed intraclade resolution and divergence time estimation of Esociformes + Salmoniformes based on whole mitochondrial genome sequences - Campbell, M. A.; Lopez, J. A.; Sado, T.; Miya, M. (Gene, 2013)

Resolution of ray-finned fish phylogeny and timing of diversification - Near, T. J.; Eytan, R. I.; Dornburg, A.; Kuhn, K. L.; Moore, J. A.; Davis, M. P.; Wainwright, P. C.; Friedman, M.; Smith, W. L. (Proc Natl Acad Sci U S A, 2012)

Framing the Salmonidae Family phylogenetic portrait: a more complete picture from increased taxon sampling - Crete-Lafreniere, A.; Weir, L. K.; Bernatchez, L. (PLoS One, 2012)

The rapid generation of mutations data matrixes from protein sequences - Jones, D. T.; Taylor, W. R.; Thornton, J. M. (CABIOS, 1992)

An improved general amino acid replacement matrix - Le, S. Q.; Gascuel, O. (Mol Biol Evol, 2008)

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach - Whelan, S.; Goldman, N. (Mol Biol Evol, 2001)

Trans-species polymorphism of the major histocompatibility complex-encoded proteasome subunit LMP7 in an amphibian genus - Nonaka, M.; Yamada-Namikawa, C.; Flajnik, M. F.; Du Pasquier, L. (Xenopus Immunogenetics, 2000)